Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs2135550 chr15:84749199 A/G 6.23E-11 172 7.95 27.33 22.63 KM Plot
UCEC rs2168442 chr3:46919379 A/G 3.0E-6 166 24.07 19.17 8.02 KM Plot
UCEC rs2181525 chr10:88766776 A/G 4.83E-5 168 25.87 23.57 21.83 KM Plot
UCEC rs2181727 chr13:101508242 G/T 1.7E-6 174 22.7 23.82 10.17 KM Plot
UCEC rs221657 chr6:105548850 C/T 1.59E-5 172 14.23 20.8 22.85 KM Plot
UCEC rs2237041 chr4:110839954 C/T 0.000117 174 21.5 25.87 17.03 KM Plot
UCEC rs2242239 chr5:173031732 G/A 8.5E-6 172 22.57 20.9 11.53 KM Plot
UCEC rs2250616 chr4:110836564 C/T 9.46E-6 174 21.5 24.07 19.13 KM Plot
UCEC rs2270910 chr5:54456734 C/G 6.32E-10 170 21.55 23.43 20.33 KM Plot
UCEC rs2272248 chr11:73371942 A/C 3.84E-7 172 21.5 32.75 4.33 KM Plot
UCEC rs2292985 chr4:57189498 A/G 1.63E-5 174 20.17 21.27 32.2 KM Plot
UCEC rs2298977 chr4:110837573 C/A 8.7E-7 168 21.6 25.07 17.03 KM Plot
UCEC rs2341203 chr15:85105686 A/G 0 174 1.67 20.33 22.63 KM Plot
UCEC rs2347136 chr4:110841026 C/A 2.45E-5 169 22.2 25.47 17.03 KM Plot
UCEC rs2367990 chr2:180843126 C/T 0.000119 173 13.63 22.7 22.57 KM Plot